San Francisco is unusual: on top of California's state obligations, the city levies its own business taxes, so a San Francisco file has to track a layer most other California businesses never touch. We set QuickBooks up to carry that layer cleanly and link you to the city's official source rather than quote a figure that could be stale.
The city's Office of the Treasurer & Tax Collector administers San Francisco's business taxes — including a gross-receipts tax and business-registration requirements that apply to companies doing business in the city. Because those rates, thresholds, and exemptions change and depend on your gross receipts and activity, we won't publish a number here; the city's own pages are the source of truth, and we set the file against them. What we do is give gross receipts a clean home in your ledger so the figure the city wants is easy to produce and reconcile. For the California side of the picture — California's annual or minimum franchise tax, which generally applies to LLCs, LPs, LLPs and corporations with exceptions, the district sales taxes, and how your entity type changes the setup — see our California QuickBooks consultant page, which covers it in full with the authoritative Franchise Tax Board and CDTFA sources. We keep the books; your CPA files the returns.